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# fmt: off
# flake8: noqa
"""Datasets."""
from .coco import COCO
from .tao import TAO

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# fmt: off
# flake8: noqa
import csv
import io
import os
import traceback
import zipfile
from abc import ABC, abstractmethod
from copy import deepcopy
import numpy as np
from .. import _timing
from ..utils import TrackEvalException
class _BaseDataset(ABC):
@abstractmethod
def __init__(self):
self.tracker_list = None
self.seq_list = None
self.class_list = None
self.output_fol = None
self.output_sub_fol = None
self.should_classes_combine = True
self.use_super_categories = False
# Functions to implement:
@abstractmethod
def _load_raw_file(self, tracker, seq, is_gt):
...
@_timing.time
@abstractmethod
def get_preprocessed_seq_data(self, raw_data, cls):
...
@abstractmethod
def _calculate_similarities(self, gt_dets_t, tracker_dets_t):
...
# Helper functions for all datasets:
@classmethod
def get_class_name(cls):
return cls.__name__
def get_name(self):
return self.get_class_name()
def get_output_fol(self, tracker):
return os.path.join(self.output_fol, tracker, self.output_sub_fol)
def get_display_name(self, tracker):
"""Can be overwritten if the trackers name (in files) is different to how it should be displayed.
By default this method just returns the trackers name as is.
"""
return tracker
def get_eval_info(self):
"""Return info about the dataset needed for the Evaluator"""
return self.tracker_list, self.seq_list, self.class_list
@_timing.time
def get_raw_seq_data(self, tracker, seq):
"""Loads raw data (tracker and ground-truth) for a single tracker on a single sequence.
Raw data includes all of the information needed for both preprocessing and evaluation, for all classes.
A later function (get_processed_seq_data) will perform such preprocessing and extract relevant information for
the evaluation of each class.
This returns a dict which contains the fields:
[num_timesteps]: integer
[gt_ids, tracker_ids, gt_classes, tracker_classes, tracker_confidences]:
list (for each timestep) of 1D NDArrays (for each det).
[gt_dets, tracker_dets, gt_crowd_ignore_regions]: list (for each timestep) of lists of detections.
[similarity_scores]: list (for each timestep) of 2D NDArrays.
[gt_extras]: dict (for each extra) of lists (for each timestep) of 1D NDArrays (for each det).
gt_extras contains dataset specific information used for preprocessing such as occlusion and truncation levels.
Note that similarities are extracted as part of the dataset and not the metric, because almost all metrics are
independent of the exact method of calculating the similarity. However datasets are not (e.g. segmentation
masks vs 2D boxes vs 3D boxes).
We calculate the similarity before preprocessing because often both preprocessing and evaluation require it and
we don't wish to calculate this twice.
We calculate similarity between all gt and tracker classes (not just each class individually) to allow for
calculation of metrics such as class confusion matrices. Typically the impact of this on performance is low.
"""
# Load raw data.
raw_gt_data = self._load_raw_file(tracker, seq, is_gt=True)
raw_tracker_data = self._load_raw_file(tracker, seq, is_gt=False)
raw_data = {**raw_tracker_data, **raw_gt_data} # Merges dictionaries
# Calculate similarities for each timestep.
similarity_scores = []
for _, (gt_dets_t, tracker_dets_t) in enumerate(
zip(raw_data["gt_dets"], raw_data["tk_dets"])
):
ious = self._calculate_similarities(gt_dets_t, tracker_dets_t)
similarity_scores.append(ious)
raw_data["similarity_scores"] = similarity_scores
return raw_data
@staticmethod
def _load_simple_text_file(
file,
time_col=0,
id_col=None,
remove_negative_ids=False,
valid_filter=None,
crowd_ignore_filter=None,
convert_filter=None,
is_zipped=False,
zip_file=None,
force_delimiters=None,
):
"""Function that loads data which is in a commonly used text file format.
Assumes each det is given by one row of a text file.
There is no limit to the number or meaning of each column,
however one column needs to give the timestep of each det (time_col) which is default col 0.
The file dialect (deliminator, num cols, etc) is determined automatically.
This function automatically separates dets by timestep,
and is much faster than alternatives such as np.loadtext or pandas.
If remove_negative_ids is True and id_col is not None, dets with negative values in id_col are excluded.
These are not excluded from ignore data.
valid_filter can be used to only include certain classes.
It is a dict with ints as keys, and lists as values,
such that a row is included if "row[key].lower() is in value" for all key/value pairs in the dict.
If None, all classes are included.
crowd_ignore_filter can be used to read crowd_ignore regions separately. It has the same format as valid filter.
convert_filter can be used to convert value read to another format.
This is used most commonly to convert classes given as string to a class id.
This is a dict such that the key is the column to convert, and the value is another dict giving the mapping.
Optionally, input files could be a zip of multiple text files for storage efficiency.
Returns read_data and ignore_data.
Each is a dict (with keys as timesteps as strings) of lists (over dets) of lists (over column values).
Note that all data is returned as strings, and must be converted to float/int later if needed.
Note that timesteps will not be present in the returned dict keys if there are no dets for them
"""
if remove_negative_ids and id_col is None:
raise TrackEvalException(
"remove_negative_ids is True, but id_col is not given."
)
if crowd_ignore_filter is None:
crowd_ignore_filter = {}
if convert_filter is None:
convert_filter = {}
try:
if is_zipped: # Either open file directly or within a zip.
if zip_file is None:
raise TrackEvalException(
"is_zipped set to True, but no zip_file is given."
)
archive = zipfile.ZipFile(os.path.join(zip_file), "r")
fp = io.TextIOWrapper(archive.open(file, "r"))
else:
fp = open(file)
read_data = {}
crowd_ignore_data = {}
fp.seek(0, os.SEEK_END)
# check if file is empty
if fp.tell():
fp.seek(0)
dialect = csv.Sniffer().sniff(
fp.readline(), delimiters=force_delimiters
) # Auto determine structure.
dialect.skipinitialspace = (
True # Deal with extra spaces between columns
)
fp.seek(0)
reader = csv.reader(fp, dialect)
for row in reader:
try:
# Deal with extra trailing spaces at the end of rows
if row[-1] in "":
row = row[:-1]
timestep = str(int(float(row[time_col])))
# Read ignore regions separately.
is_ignored = False
for ignore_key, ignore_value in crowd_ignore_filter.items():
if row[ignore_key].lower() in ignore_value:
# Convert values in one column (e.g. string to id)
for (
convert_key,
convert_value,
) in convert_filter.items():
row[convert_key] = convert_value[
row[convert_key].lower()
]
# Save data separated by timestep.
if timestep in crowd_ignore_data.keys():
crowd_ignore_data[timestep].append(row)
else:
crowd_ignore_data[timestep] = [row]
is_ignored = True
if (
is_ignored
): # if det is an ignore region, it cannot be a normal det.
continue
# Exclude some dets if not valid.
if valid_filter is not None:
for key, value in valid_filter.items():
if row[key].lower() not in value:
continue
if remove_negative_ids:
if int(float(row[id_col])) < 0:
continue
# Convert values in one column (e.g. string to id)
for convert_key, convert_value in convert_filter.items():
row[convert_key] = convert_value[row[convert_key].lower()]
# Save data separated by timestep.
if timestep in read_data.keys():
read_data[timestep].append(row)
else:
read_data[timestep] = [row]
except Exception:
exc_str_init = (
"In file %s the following line cannot be read correctly: \n"
% os.path.basename(file)
)
exc_str = " ".join([exc_str_init] + row)
raise TrackEvalException(exc_str)
fp.close()
except Exception:
print("Error loading file: %s, printing traceback." % file)
traceback.print_exc()
raise TrackEvalException(
"File %s cannot be read because it is either not present or invalidly formatted"
% os.path.basename(file)
)
return read_data, crowd_ignore_data
@staticmethod
def _calculate_mask_ious(masks1, masks2, is_encoded=False, do_ioa=False):
"""Calculates the IOU (intersection over union) between two arrays of segmentation masks.
If is_encoded a run length encoding with pycocotools is assumed as input format, otherwise an input of numpy
arrays of the shape (num_masks, height, width) is assumed and the encoding is performed.
If do_ioa (intersection over area) , then calculates the intersection over the area of masks1 - this is commonly
used to determine if detections are within crowd ignore region.
:param masks1: first set of masks (numpy array of shape (num_masks, height, width) if not encoded,
else pycocotools rle encoded format)
:param masks2: second set of masks (numpy array of shape (num_masks, height, width) if not encoded,
else pycocotools rle encoded format)
:param is_encoded: whether the input is in pycocotools rle encoded format
:param do_ioa: whether to perform IoA computation
:return: the IoU/IoA scores
"""
# Only loaded when run to reduce minimum requirements
from pycocotools import mask as mask_utils
# use pycocotools for run length encoding of masks
if not is_encoded:
masks1 = mask_utils.encode(
np.array(np.transpose(masks1, (1, 2, 0)), order="F")
)
masks2 = mask_utils.encode(
np.array(np.transpose(masks2, (1, 2, 0)), order="F")
)
# use pycocotools for iou computation of rle encoded masks
ious = mask_utils.iou(masks1, masks2, [do_ioa] * len(masks2))
if len(masks1) == 0 or len(masks2) == 0:
ious = np.asarray(ious).reshape(len(masks1), len(masks2))
assert (ious >= 0 - np.finfo("float").eps).all()
assert (ious <= 1 + np.finfo("float").eps).all()
return ious
@staticmethod
def _calculate_box_ious(bboxes1, bboxes2, box_format="xywh", do_ioa=False):
"""Calculates the IOU (intersection over union) between two arrays of boxes.
Allows variable box formats ('xywh' and 'x0y0x1y1').
If do_ioa (intersection over area) , then calculates the intersection over the area of boxes1 - this is commonly
used to determine if detections are within crowd ignore region.
"""
if box_format in "xywh":
# layout: (x0, y0, w, h)
bboxes1 = deepcopy(bboxes1)
bboxes2 = deepcopy(bboxes2)
bboxes1[:, 2] = bboxes1[:, 0] + bboxes1[:, 2]
bboxes1[:, 3] = bboxes1[:, 1] + bboxes1[:, 3]
bboxes2[:, 2] = bboxes2[:, 0] + bboxes2[:, 2]
bboxes2[:, 3] = bboxes2[:, 1] + bboxes2[:, 3]
elif box_format not in "x0y0x1y1":
raise (TrackEvalException("box_format %s is not implemented" % box_format))
# layout: (x0, y0, x1, y1)
min_ = np.minimum(bboxes1[:, np.newaxis, :], bboxes2[np.newaxis, :, :])
max_ = np.maximum(bboxes1[:, np.newaxis, :], bboxes2[np.newaxis, :, :])
intersection = np.maximum(min_[..., 2] - max_[..., 0], 0) * np.maximum(
min_[..., 3] - max_[..., 1], 0
)
area1 = (bboxes1[..., 2] - bboxes1[..., 0]) * (
bboxes1[..., 3] - bboxes1[..., 1]
)
if do_ioa:
ioas = np.zeros_like(intersection)
valid_mask = area1 > 0 + np.finfo("float").eps
ioas[valid_mask, :] = (
intersection[valid_mask, :] / area1[valid_mask][:, np.newaxis]
)
return ioas
else:
area2 = (bboxes2[..., 2] - bboxes2[..., 0]) * (
bboxes2[..., 3] - bboxes2[..., 1]
)
union = area1[:, np.newaxis] + area2[np.newaxis, :] - intersection
intersection[area1 <= 0 + np.finfo("float").eps, :] = 0
intersection[:, area2 <= 0 + np.finfo("float").eps] = 0
intersection[union <= 0 + np.finfo("float").eps] = 0
union[union <= 0 + np.finfo("float").eps] = 1
ious = intersection / union
return ious
@staticmethod
def _calculate_euclidean_similarity(dets1, dets2, zero_distance=2.0):
"""Calculates the euclidean distance between two sets of detections, and then converts this into a similarity
measure with values between 0 and 1 using the following formula: sim = max(0, 1 - dist/zero_distance).
The default zero_distance of 2.0, corresponds to the default used in MOT15_3D, such that a 0.5 similarity
threshold corresponds to a 1m distance threshold for TPs.
"""
dist = np.linalg.norm(dets1[:, np.newaxis] - dets2[np.newaxis, :], axis=2)
sim = np.maximum(0, 1 - dist / zero_distance)
return sim
@staticmethod
def _check_unique_ids(data, after_preproc=False):
"""Check the requirement that the tracker_ids and gt_ids are unique per timestep"""
gt_ids = data["gt_ids"]
tracker_ids = data["tk_ids"]
for t, (gt_ids_t, tracker_ids_t) in enumerate(zip(gt_ids, tracker_ids)):
if len(tracker_ids_t) > 0:
unique_ids, counts = np.unique(tracker_ids_t, return_counts=True)
if np.max(counts) != 1:
duplicate_ids = unique_ids[counts > 1]
exc_str_init = (
"Tracker predicts the same ID more than once in a single timestep "
"(seq: %s, frame: %i, ids:" % (data["seq"], t + 1)
)
exc_str = (
" ".join([exc_str_init] + [str(d) for d in duplicate_ids]) + ")"
)
if after_preproc:
exc_str_init += (
"\n Note that this error occurred after preprocessing (but not before), "
"so ids may not be as in file, and something seems wrong with preproc."
)
raise TrackEvalException(exc_str)
if len(gt_ids_t) > 0:
unique_ids, counts = np.unique(gt_ids_t, return_counts=True)
if np.max(counts) != 1:
duplicate_ids = unique_ids[counts > 1]
exc_str_init = (
"Ground-truth has the same ID more than once in a single timestep "
"(seq: %s, frame: %i, ids:" % (data["seq"], t + 1)
)
exc_str = (
" ".join([exc_str_init] + [str(d) for d in duplicate_ids]) + ")"
)
if after_preproc:
exc_str_init += (
"\n Note that this error occurred after preprocessing (but not before), "
"so ids may not be as in file, and something seems wrong with preproc."
)
raise TrackEvalException(exc_str)

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# fmt: off
# flake8: noqa
"""COCO Dataset."""
import copy
import itertools
import json
import os
from collections import defaultdict
import numpy as np
from scipy.optimize import linear_sum_assignment
from .. import _timing, utils
from ..config import get_default_dataset_config, init_config
from ..utils import TrackEvalException
from ._base_dataset import _BaseDataset
class COCO(_BaseDataset):
"""Tracking datasets in COCO format."""
def __init__(self, config=None):
"""Initialize dataset, checking that all required files are present."""
super().__init__()
# Fill non-given config values with defaults
self.config = init_config(config, get_default_dataset_config(), self.get_name())
self.gt_fol = self.config["GT_FOLDER"]
self.tracker_fol = self.config["TRACKERS_FOLDER"]
self.should_classes_combine = True
self.use_super_categories = False
self.use_mask = self.config["USE_MASK"]
self.tracker_sub_fol = self.config["TRACKER_SUB_FOLDER"]
self.output_fol = self.config["OUTPUT_FOLDER"]
if self.output_fol is None:
self.output_fol = self.tracker_fol
self.output_sub_fol = self.config["OUTPUT_SUB_FOLDER"]
if self.gt_fol.endswith(".json"):
self.gt_data = json.load(open(self.gt_fol, "r"))
else:
gt_dir_files = [
file for file in os.listdir(self.gt_fol) if file.endswith(".json")
]
if len(gt_dir_files) != 1:
raise TrackEvalException(
f"{self.gt_fol} does not contain exactly one json file."
)
with open(os.path.join(self.gt_fol, gt_dir_files[0])) as f:
self.gt_data = json.load(f)
# fill missing video ids
self._fill_video_ids_inplace(self.gt_data["annotations"])
# get sequences to eval and sequence information
self.seq_list = [
vid["name"].replace("/", "-") for vid in self.gt_data["videos"]
]
self.seq_name2seqid = {
vid["name"].replace("/", "-"): vid["id"] for vid in self.gt_data["videos"]
}
# compute mappings from videos to annotation data
self.video2gt_track, self.video2gt_image = self._compute_vid_mappings(
self.gt_data["annotations"]
)
# compute sequence lengths
self.seq_lengths = {vid["id"]: 0 for vid in self.gt_data["videos"]}
for img in self.gt_data["images"]:
self.seq_lengths[img["video_id"]] += 1
self.seq2images2timestep = self._compute_image_to_timestep_mappings()
self.seq2cls = {
vid["id"]: {
"pos_cat_ids": list(
{track["category_id"] for track in self.video2gt_track[vid["id"]]}
),
}
for vid in self.gt_data["videos"]
}
# Get classes to eval
considered_vid_ids = [self.seq_name2seqid[vid] for vid in self.seq_list]
seen_cats = set(
[
cat_id
for vid_id in considered_vid_ids
for cat_id in self.seq2cls[vid_id]["pos_cat_ids"]
]
)
# only classes with ground truth are evaluated in TAO
self.valid_classes = [
cls["name"] for cls in self.gt_data["categories"] if cls["id"] in seen_cats
]
cls_name2clsid_map = {
cls["name"]: cls["id"] for cls in self.gt_data["categories"]
}
if self.config["CLASSES_TO_EVAL"]:
self.class_list = [
cls.lower() if cls.lower() in self.valid_classes else None
for cls in self.config["CLASSES_TO_EVAL"]
]
if not all(self.class_list):
valid_cls = ", ".join(self.valid_classes)
raise TrackEvalException(
"Attempted to evaluate an invalid class. Only classes "
f"{valid_cls} are valid (classes present in ground truth"
" data)."
)
else:
self.class_list = [cls for cls in self.valid_classes]
self.cls_name2clsid = {
k: v for k, v in cls_name2clsid_map.items() if k in self.class_list
}
self.clsid2cls_name = {
v: k for k, v in cls_name2clsid_map.items() if k in self.class_list
}
# get trackers to eval
if self.config["TRACKERS_TO_EVAL"] is None:
self.tracker_list = os.listdir(self.tracker_fol)
else:
self.tracker_list = self.config["TRACKERS_TO_EVAL"]
if self.config["TRACKER_DISPLAY_NAMES"] is None:
self.tracker_to_disp = dict(zip(self.tracker_list, self.tracker_list))
elif (self.config["TRACKERS_TO_EVAL"] is not None) and (
len(self.config["TK_DISPLAY_NAMES"]) == len(self.tracker_list)
):
self.tracker_to_disp = dict(
zip(self.tracker_list, self.config["TK_DISPLAY_NAMES"])
)
else:
raise TrackEvalException(
"List of tracker files and tracker display names do not match."
)
self.tracker_data = {tracker: dict() for tracker in self.tracker_list}
for tracker in self.tracker_list:
if self.tracker_sub_fol.endswith(".json"):
with open(os.path.join(self.tracker_sub_fol)) as f:
curr_data = json.load(f)
else:
tr_dir = os.path.join(self.tracker_fol, tracker, self.tracker_sub_fol)
tr_dir_files = [
file for file in os.listdir(tr_dir) if file.endswith(".json")
]
if len(tr_dir_files) != 1:
raise TrackEvalException(
f"{tr_dir} does not contain exactly one json file."
)
with open(os.path.join(tr_dir, tr_dir_files[0])) as f:
curr_data = json.load(f)
# limit detections if MAX_DETECTIONS > 0
if self.config["MAX_DETECTIONS"]:
curr_data = self._limit_dets_per_image(curr_data)
# fill missing video ids
self._fill_video_ids_inplace(curr_data)
# make track ids unique over whole evaluation set
self._make_tk_ids_unique(curr_data)
# get tracker sequence information
curr_vids2tracks, curr_vids2images = self._compute_vid_mappings(curr_data)
self.tracker_data[tracker]["vids_to_tracks"] = curr_vids2tracks
self.tracker_data[tracker]["vids_to_images"] = curr_vids2images
def get_display_name(self, tracker):
return self.tracker_to_disp[tracker]
def _load_raw_file(self, tracker, seq, is_gt):
"""Load a file (gt or tracker) in the TAO format
If is_gt, this returns a dict which contains the fields:
[gt_ids, gt_classes]:
list (for each timestep) of 1D NDArrays (for each det).
[gt_dets]: list (for each timestep) of lists of detections.
if not is_gt, this returns a dict which contains the fields:
[tk_ids, tk_classes]:
list (for each timestep) of 1D NDArrays (for each det).
[tk_dets]: list (for each timestep) of lists of detections.
"""
seq_id = self.seq_name2seqid[seq]
# file location
if is_gt:
imgs = self.video2gt_image[seq_id]
else:
imgs = self.tracker_data[tracker]["vids_to_images"][seq_id]
# convert data to required format
num_timesteps = self.seq_lengths[seq_id]
img_to_timestep = self.seq2images2timestep[seq_id]
data_keys = ["ids", "classes", "dets"]
# if not is_gt:
# data_keys += ["tk_confidences"]
raw_data = {key: [None] * num_timesteps for key in data_keys}
for img in imgs:
# some tracker data contains images without any ground truth info,
# these are ignored
if img["id"] not in img_to_timestep:
continue
t = img_to_timestep[img["id"]]
anns = img["annotations"]
tk_str = utils.get_track_id_str(anns[0])
if self.use_mask:
# When using mask, extract segmentation data
raw_data["dets"][t] = [ann.get("segmentation") for ann in anns]
else:
# When using bbox, extract bbox data
raw_data["dets"][t] = np.atleast_2d([ann["bbox"] for ann in anns]).astype(
float
)
raw_data["ids"][t] = np.atleast_1d([ann[tk_str] for ann in anns]).astype(
int
)
raw_data["classes"][t] = np.atleast_1d(
[ann["category_id"] for ann in anns]
).astype(int)
# if not is_gt:
# raw_data["tk_confidences"][t] = np.atleast_1d(
# [ann["score"] for ann in anns]
# ).astype(float)
for t, d in enumerate(raw_data["dets"]):
if d is None:
raw_data["dets"][t] = np.empty((0, 4)).astype(float)
raw_data["ids"][t] = np.empty(0).astype(int)
raw_data["classes"][t] = np.empty(0).astype(int)
# if not is_gt:
# raw_data["tk_confidences"][t] = np.empty(0)
if is_gt:
key_map = {"ids": "gt_ids", "classes": "gt_classes", "dets": "gt_dets"}
else:
key_map = {"ids": "tk_ids", "classes": "tk_classes", "dets": "tk_dets"}
for k, v in key_map.items():
raw_data[v] = raw_data.pop(k)
raw_data["num_timesteps"] = num_timesteps
raw_data["seq"] = seq
return raw_data
def get_preprocessed_seq_data_thr(self, raw_data, cls, assignment=None):
"""Preprocess data for a single sequence for a single class.
Inputs:
raw_data: dict containing the data for the sequence already
read in by get_raw_seq_data().
cls: class to be evaluated.
Outputs:
gt_ids:
list (for each timestep) of ids of GT tracks
tk_ids:
list (for each timestep) of ids of predicted tracks (all for TP
matching (Det + AssocA))
tk_overlap_ids:
list (for each timestep) of ids of predicted tracks that overlap
with GTs
tk_dets:
list (for each timestep) of lists of detections that
corresponding to the tk_ids
tk_classes:
list (for each timestep) of lists of classes that corresponding
to the tk_ids
tk_confidences:
list (for each timestep) of lists of classes that corresponding
to the tk_ids
sim_scores:
similarity score between gt_ids and tk_ids.
"""
if cls != "all":
cls_id = self.cls_name2clsid[cls]
data_keys = [
"gt_ids",
"tk_ids",
"gt_id_map",
"tk_id_map",
"gt_dets",
"gt_classes",
"gt_class_name",
"tk_overlap_classes",
"tk_overlap_ids",
"tk_class_eval_tk_ids",
"tk_dets",
"tk_classes",
# "tk_confidences",
"tk_exh_ids",
"sim_scores",
]
data = {key: [None] * raw_data["num_timesteps"] for key in data_keys}
unique_gt_ids = []
unique_tk_ids = []
num_gt_dets = 0
num_tk_cls_dets = 0
num_tk_overlap_dets = 0
overlap_ious_thr = 0.5
loc_and_asso_tk_ids = []
exh_class_tk_ids = []
for t in range(raw_data["num_timesteps"]):
# only extract relevant dets for this class for preproc and eval
if cls == "all":
gt_class_mask = np.ones_like(raw_data["gt_classes"][t]).astype(bool)
else:
gt_class_mask = np.atleast_1d(
raw_data["gt_classes"][t] == cls_id
).astype(bool)
# select GT that is not in the evaluating classes
if assignment is not None and assignment:
all_gt_ids = list(assignment[t].keys())
gt_ids_in = raw_data["gt_ids"][t][gt_class_mask]
gt_ids_out = set(all_gt_ids) - set(gt_ids_in)
tk_ids_out = set([assignment[t][key] for key in list(gt_ids_out)])
# compute overlapped tracks and add their ids to overlap_tk_ids
sim_scores = raw_data["similarity_scores"]
overlap_ids_masks = (sim_scores[t][gt_class_mask] >= overlap_ious_thr).any(
axis=0
)
overlap_tk_ids_t = raw_data["tk_ids"][t][overlap_ids_masks]
if assignment is not None and assignment:
data["tk_overlap_ids"][t] = list(set(overlap_tk_ids_t) - tk_ids_out)
else:
data["tk_overlap_ids"][t] = list(set(overlap_tk_ids_t))
loc_and_asso_tk_ids += data["tk_overlap_ids"][t]
data["tk_exh_ids"][t] = []
if cls == "all":
continue
# add the track ids of exclusive annotated class to exh_class_tk_ids
tk_exh_mask = np.atleast_1d(raw_data["tk_classes"][t] == cls_id)
tk_exh_mask = tk_exh_mask.astype(bool)
exh_class_tk_ids_t = raw_data["tk_ids"][t][tk_exh_mask]
exh_class_tk_ids.append(exh_class_tk_ids_t)
data["tk_exh_ids"][t] = exh_class_tk_ids_t
# remove tk_ids that has been assigned to GT belongs to other classes.
loc_and_asso_tk_ids = list(set(loc_and_asso_tk_ids))
# remove all unwanted unmatched tracker detections
for t in range(raw_data["num_timesteps"]):
# add gt to the data
if cls == "all":
gt_class_mask = np.ones_like(raw_data["gt_classes"][t]).astype(bool)
else:
gt_class_mask = np.atleast_1d(
raw_data["gt_classes"][t] == cls_id
).astype(bool)
data["gt_classes"][t] = cls_id
data["gt_class_name"][t] = cls
gt_ids = raw_data["gt_ids"][t][gt_class_mask]
if self.use_mask:
gt_dets = [raw_data['gt_dets'][t][ind] for ind in range(len(gt_class_mask)) if gt_class_mask[ind]]
else:
gt_dets = raw_data["gt_dets"][t][gt_class_mask]
data["gt_ids"][t] = gt_ids
data["gt_dets"][t] = gt_dets
# filter pred and only keep those that highly overlap with GTs
tk_mask = np.isin(
raw_data["tk_ids"][t], np.array(loc_and_asso_tk_ids), assume_unique=True
)
tk_overlap_mask = np.isin(
raw_data["tk_ids"][t],
np.array(data["tk_overlap_ids"][t]),
assume_unique=True,
)
tk_ids = raw_data["tk_ids"][t][tk_mask]
if self.use_mask:
tk_dets = [raw_data['tk_dets'][t][ind] for ind in range(len(tk_mask)) if
tk_mask[ind]]
else:
tk_dets = raw_data["tk_dets"][t][tk_mask]
tracker_classes = raw_data["tk_classes"][t][tk_mask]
# add overlap classes for computing the FP for Cls term
tracker_overlap_classes = raw_data["tk_classes"][t][tk_overlap_mask]
# tracker_confidences = raw_data["tk_confidences"][t][tk_mask]
sim_scores_masked = sim_scores[t][gt_class_mask, :][:, tk_mask]
# add filtered prediction to the data
data["tk_classes"][t] = tracker_classes
data["tk_overlap_classes"][t] = tracker_overlap_classes
data["tk_ids"][t] = tk_ids
data["tk_dets"][t] = tk_dets
# data["tk_confidences"][t] = tracker_confidences
data["sim_scores"][t] = sim_scores_masked
data["tk_class_eval_tk_ids"][t] = set(
list(data["tk_overlap_ids"][t]) + list(data["tk_exh_ids"][t])
)
# count total number of detections
unique_gt_ids += list(np.unique(data["gt_ids"][t]))
# the unique track ids are for association.
unique_tk_ids += list(np.unique(data["tk_ids"][t]))
num_tk_overlap_dets += len(data["tk_overlap_ids"][t])
num_tk_cls_dets += len(data["tk_class_eval_tk_ids"][t])
num_gt_dets += len(data["gt_ids"][t])
# re-label IDs such that there are no empty IDs
if len(unique_gt_ids) > 0:
unique_gt_ids = np.unique(unique_gt_ids)
gt_id_map = np.nan * np.ones((np.max(unique_gt_ids) + 1))
gt_id_map[unique_gt_ids] = np.arange(len(unique_gt_ids))
data["gt_id_map"] = {}
for gt_id in unique_gt_ids:
new_gt_id = gt_id_map[gt_id].astype(int)
data["gt_id_map"][new_gt_id] = gt_id
for t in range(raw_data["num_timesteps"]):
if len(data["gt_ids"][t]) > 0:
data["gt_ids"][t] = gt_id_map[data["gt_ids"][t]].astype(int)
if len(unique_tk_ids) > 0:
unique_tk_ids = np.unique(unique_tk_ids)
tk_id_map = np.nan * np.ones((np.max(unique_tk_ids) + 1))
tk_id_map[unique_tk_ids] = np.arange(len(unique_tk_ids))
data["tk_id_map"] = {}
for track_id in unique_tk_ids:
new_track_id = tk_id_map[track_id].astype(int)
data["tk_id_map"][new_track_id] = track_id
for t in range(raw_data["num_timesteps"]):
if len(data["tk_ids"][t]) > 0:
data["tk_ids"][t] = tk_id_map[data["tk_ids"][t]].astype(int)
if len(data["tk_overlap_ids"][t]) > 0:
data["tk_overlap_ids"][t] = tk_id_map[
data["tk_overlap_ids"][t]
].astype(int)
# record overview statistics.
data["num_tk_cls_dets"] = num_tk_cls_dets
data["num_tk_overlap_dets"] = num_tk_overlap_dets
data["num_gt_dets"] = num_gt_dets
data["num_tk_ids"] = len(unique_tk_ids)
data["num_gt_ids"] = len(unique_gt_ids)
data["num_timesteps"] = raw_data["num_timesteps"]
data["seq"] = raw_data["seq"]
self._check_unique_ids(data)
return data
@_timing.time
def get_preprocessed_seq_data(
self, raw_data, cls, assignment=None, thresholds=[50, 75]
):
"""Preprocess data for a single sequence for a single class."""
data = {}
if thresholds is None:
thresholds = [50, 75]
elif isinstance(thresholds, int):
thresholds = [thresholds]
for thr in thresholds:
assignment_thr = None
if assignment is not None:
assignment_thr = assignment[thr]
data[thr] = self.get_preprocessed_seq_data_thr(
raw_data, cls, assignment_thr
)
return data
def _calculate_similarities(self, gt_dets_t, tk_dets_t):
"""Compute similarity scores."""
if self.use_mask:
similarity_scores = self._calculate_mask_ious(gt_dets_t, tk_dets_t, is_encoded=True, do_ioa=False)
else:
similarity_scores = self._calculate_box_ious(gt_dets_t, tk_dets_t)
return similarity_scores
def _compute_vid_mappings(self, annotations):
"""Computes mappings from videos to corresponding tracks and images."""
vids_to_tracks = {}
vids_to_imgs = {}
vid_ids = [vid["id"] for vid in self.gt_data["videos"]]
# compute an mapping from image IDs to images
images = {}
for image in self.gt_data["images"]:
images[image["id"]] = image
tk_str = utils.get_track_id_str(annotations[0])
for ann in annotations:
ann["area"] = ann["bbox"][2] * ann["bbox"][3]
vid = ann["video_id"]
if ann["video_id"] not in vids_to_tracks.keys():
vids_to_tracks[ann["video_id"]] = list()
if ann["video_id"] not in vids_to_imgs.keys():
vids_to_imgs[ann["video_id"]] = list()
# fill in vids_to_tracks
tid = ann[tk_str]
exist_tids = [track["id"] for track in vids_to_tracks[vid]]
try:
index1 = exist_tids.index(tid)
except ValueError:
index1 = -1
if tid not in exist_tids:
curr_track = {
"id": tid,
"category_id": ann["category_id"],
"video_id": vid,
"annotations": [ann],
}
vids_to_tracks[vid].append(curr_track)
else:
vids_to_tracks[vid][index1]["annotations"].append(ann)
# fill in vids_to_imgs
img_id = ann["image_id"]
exist_img_ids = [img["id"] for img in vids_to_imgs[vid]]
try:
index2 = exist_img_ids.index(img_id)
except ValueError:
index2 = -1
if index2 == -1:
curr_img = {"id": img_id, "annotations": [ann]}
vids_to_imgs[vid].append(curr_img)
else:
vids_to_imgs[vid][index2]["annotations"].append(ann)
# sort annotations by frame index and compute track area
for vid, tracks in vids_to_tracks.items():
for track in tracks:
track["annotations"] = sorted(
track["annotations"],
key=lambda x: images[x["image_id"]]["frame_id"],
)
# compute average area
track["area"] = sum(x["area"] for x in track["annotations"]) / len(
track["annotations"]
)
# ensure all videos are present
for vid_id in vid_ids:
if vid_id not in vids_to_tracks.keys():
vids_to_tracks[vid_id] = []
if vid_id not in vids_to_imgs.keys():
vids_to_imgs[vid_id] = []
return vids_to_tracks, vids_to_imgs
def _compute_image_to_timestep_mappings(self):
"""Computes a mapping from images to timestep in sequence."""
images = {}
for image in self.gt_data["images"]:
images[image["id"]] = image
seq_to_imgs_to_timestep = {vid["id"]: dict() for vid in self.gt_data["videos"]}
for vid in seq_to_imgs_to_timestep:
curr_imgs = [img["id"] for img in self.video2gt_image[vid]]
curr_imgs = sorted(curr_imgs, key=lambda x: images[x]["frame_id"])
seq_to_imgs_to_timestep[vid] = {
curr_imgs[i]: i for i in range(len(curr_imgs))
}
return seq_to_imgs_to_timestep
def _limit_dets_per_image(self, annotations):
"""Limits the number of detections for each image.
Adapted from https://github.com/TAO-Dataset/.
"""
max_dets = self.config["MAX_DETECTIONS"]
img_ann = defaultdict(list)
for ann in annotations:
img_ann[ann["image_id"]].append(ann)
for img_id, _anns in img_ann.items():
if len(_anns) <= max_dets:
continue
_anns = sorted(_anns, key=lambda x: x["score"], reverse=True)
img_ann[img_id] = _anns[:max_dets]
return [ann for anns in img_ann.values() for ann in anns]
def _fill_video_ids_inplace(self, annotations):
"""Fills in missing video IDs inplace.
Adapted from https://github.com/TAO-Dataset/.
"""
missing_video_id = [x for x in annotations if "video_id" not in x]
if missing_video_id:
image_id_to_video_id = {
x["id"]: x["video_id"] for x in self.gt_data["images"]
}
for x in missing_video_id:
x["video_id"] = image_id_to_video_id[x["image_id"]]
@staticmethod
def _make_tk_ids_unique(annotations):
"""Makes track IDs unqiue over the whole annotation set.
Adapted from https://github.com/TAO-Dataset/.
"""
track_id_videos = {}
track_ids_to_update = set()
max_track_id = 0
tk_str = utils.get_track_id_str(annotations[0])
for ann in annotations:
t = int(ann[tk_str])
if t not in track_id_videos:
track_id_videos[t] = ann["video_id"]
if ann["video_id"] != track_id_videos[t]:
# track id is assigned to multiple videos
track_ids_to_update.add(t)
max_track_id = max(max_track_id, t)
if track_ids_to_update:
print("true")
next_id = itertools.count(max_track_id + 1)
new_tk_ids = defaultdict(lambda: next(next_id))
for ann in annotations:
t = ann[tk_str]
v = ann["video_id"]
if t in track_ids_to_update:
ann[tk_str] = new_tk_ids[t, v]
return len(track_ids_to_update)

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# fmt: off
# flake8: noqa
"""TAO Dataset."""
import copy
import itertools
import json
import os
from collections import defaultdict
import numpy as np
from .. import _timing
from ..config import get_default_dataset_config, init_config
from ..utils import TrackEvalException
from ._base_dataset import _BaseDataset
class TAO(_BaseDataset):
"""Dataset class for TAO tracking"""
def __init__(self, config=None):
"""Initialize dataset, checking that all required files are present."""
super().__init__()
# Fill non-given config values with defaults
self.config = init_config(config, get_default_dataset_config(), self.get_name())
self.gt_fol = self.config["GT_FOLDER"]
self.tracker_fol = self.config["TRACKERS_FOLDER"]
self.should_classes_combine = True
self.use_super_categories = False
self.use_mask = self.config["USE_MASK"]
self.tracker_sub_fol = self.config["TRACKER_SUB_FOLDER"]
self.output_fol = self.config["OUTPUT_FOLDER"]
if self.output_fol is None:
self.output_fol = self.tracker_fol
self.output_sub_fol = self.config["OUTPUT_SUB_FOLDER"]
if self.gt_fol.endswith(".json"):
self.gt_data = json.load(open(self.gt_fol, "r"))
else:
gt_dir_files = [
file for file in os.listdir(self.gt_fol) if file.endswith(".json")
]
if len(gt_dir_files) != 1:
raise TrackEvalException(
f"{self.gt_fol} does not contain exactly one json file."
)
with open(os.path.join(self.gt_fol, gt_dir_files[0])) as f:
self.gt_data = json.load(f)
# merge categories marked with a merged tag in TAO dataset
self._merge_categories(self.gt_data["annotations"] + self.gt_data["tracks"])
# get sequences to eval and sequence information
self.seq_list = [
vid["name"].replace("/", "-") for vid in self.gt_data["videos"]
]
self.seq_name2seqid = {
vid["name"].replace("/", "-"): vid["id"] for vid in self.gt_data["videos"]
}
# compute mappings from videos to annotation data
self.video2gt_track, self.video2gt_image = self._compute_vid_mappings(
self.gt_data["annotations"]
)
# compute sequence lengths
self.seq_lengths = {vid["id"]: 0 for vid in self.gt_data["videos"]}
for img in self.gt_data["images"]:
self.seq_lengths[img["video_id"]] += 1
self.seq2images2timestep = self._compute_image_to_timestep_mappings()
self.seq2cls = {
vid["id"]: {
"pos_cat_ids": list(
{track["category_id"] for track in self.video2gt_track[vid["id"]]}
),
"neg_cat_ids": vid["neg_category_ids"],
"not_exh_labeled_cat_ids": vid["not_exhaustive_category_ids"],
}
for vid in self.gt_data["videos"]
}
# Get classes to eval
considered_vid_ids = [self.seq_name2seqid[vid] for vid in self.seq_list]
seen_cats = set(
[
cat_id
for vid_id in considered_vid_ids
for cat_id in self.seq2cls[vid_id]["pos_cat_ids"]
]
)
# only classes with ground truth are evaluated in TAO
self.valid_classes = [
cls["name"] for cls in self.gt_data["categories"] if cls["id"] in seen_cats
]
cls_name2clsid_map = {
cls["name"]: cls["id"] for cls in self.gt_data["categories"]
}
if self.config["CLASSES_TO_EVAL"]:
self.class_list = [
cls.lower() if cls.lower() in self.valid_classes else None
for cls in self.config["CLASSES_TO_EVAL"]
]
if not all(self.class_list):
valid_cls = ", ".join(self.valid_classes)
raise TrackEvalException(
"Attempted to evaluate an invalid class. Only classes "
f"{valid_cls} are valid (classes present in ground truth"
" data)."
)
else:
self.class_list = [cls for cls in self.valid_classes]
self.cls_name2clsid = {
k: v for k, v in cls_name2clsid_map.items() if k in self.class_list
}
self.clsid2cls_name = {
v: k for k, v in cls_name2clsid_map.items() if k in self.class_list
}
# get trackers to eval
print(self.config["TRACKERS_TO_EVAL"] )
if self.config["TRACKERS_TO_EVAL"] is None:
self.tracker_list = os.listdir(self.tracker_fol)
else:
self.tracker_list = self.config["TRACKERS_TO_EVAL"]
if self.config["TRACKER_DISPLAY_NAMES"] is None:
self.tracker_to_disp = dict(zip(self.tracker_list, self.tracker_list))
elif (self.config["TRACKERS_TO_EVAL"] is not None) and (
len(self.config["TK_DISPLAY_NAMES"]) == len(self.tracker_list)
):
self.tracker_to_disp = dict(
zip(self.tracker_list, self.config["TK_DISPLAY_NAMES"])
)
else:
raise TrackEvalException(
"List of tracker files and tracker display names do not match."
)
self.tracker_data = {tracker: dict() for tracker in self.tracker_list}
for tracker in self.tracker_list:
if self.tracker_sub_fol.endswith(".json"):
with open(os.path.join(self.tracker_sub_fol)) as f:
curr_data = json.load(f)
else:
tr_dir = os.path.join(self.tracker_fol, tracker, self.tracker_sub_fol)
tr_dir_files = [
file for file in os.listdir(tr_dir) if file.endswith(".json")
]
if len(tr_dir_files) != 1:
raise TrackEvalException(
f"{tr_dir} does not contain exactly one json file."
)
with open(os.path.join(tr_dir, tr_dir_files[0])) as f:
curr_data = json.load(f)
# limit detections if MAX_DETECTIONS > 0
if self.config["MAX_DETECTIONS"]:
curr_data = self._limit_dets_per_image(curr_data)
# fill missing video ids
self._fill_video_ids_inplace(curr_data)
# make track ids unique over whole evaluation set
self._make_tk_ids_unique(curr_data)
# merge categories marked with a merged tag in TAO dataset
self._merge_categories(curr_data)
# get tracker sequence information
curr_vids2tracks, curr_vids2images = self._compute_vid_mappings(curr_data)
self.tracker_data[tracker]["vids_to_tracks"] = curr_vids2tracks
self.tracker_data[tracker]["vids_to_images"] = curr_vids2images
def get_display_name(self, tracker):
return self.tracker_to_disp[tracker]
def _load_raw_file(self, tracker, seq, is_gt):
"""Load a file (gt or tracker) in the TAO format
If is_gt, this returns a dict which contains the fields:
[gt_ids, gt_classes]:
list (for each timestep) of 1D NDArrays (for each det).
[gt_dets]: list (for each timestep) of lists of detections.
if not is_gt, this returns a dict which contains the fields:
[tk_ids, tk_classes, tk_confidences]:
list (for each timestep) of 1D NDArrays (for each det).
[tk_dets]: list (for each timestep) of lists of detections.
"""
seq_id = self.seq_name2seqid[seq]
# file location
if is_gt:
imgs = self.video2gt_image[seq_id]
else:
imgs = self.tracker_data[tracker]["vids_to_images"][seq_id]
# convert data to required format
num_timesteps = self.seq_lengths[seq_id]
img_to_timestep = self.seq2images2timestep[seq_id]
data_keys = ["ids", "classes", "dets"]
if not is_gt:
data_keys += ["tk_confidences"]
raw_data = {key: [None] * num_timesteps for key in data_keys}
for img in imgs:
# some tracker data contains images without any ground truth info,
# these are ignored
if img["id"] not in img_to_timestep:
continue
t = img_to_timestep[img["id"]]
anns = img["annotations"]
if self.use_mask:
# When using mask, extract segmentation data
raw_data["dets"][t] = [ann.get("segmentation") for ann in anns]
else:
# When using bbox, extract bbox data
raw_data["dets"][t] = np.atleast_2d([ann["bbox"] for ann in anns]).astype(
float
)
raw_data["ids"][t] = np.atleast_1d(
[ann["track_id"] for ann in anns]
).astype(int)
raw_data["classes"][t] = np.atleast_1d(
[ann["category_id"] for ann in anns]
).astype(int)
if not is_gt:
raw_data["tk_confidences"][t] = np.atleast_1d(
[ann["score"] for ann in anns]
).astype(float)
for t, d in enumerate(raw_data["dets"]):
if d is None:
raw_data["dets"][t] = np.empty((0, 4)).astype(float)
raw_data["ids"][t] = np.empty(0).astype(int)
raw_data["classes"][t] = np.empty(0).astype(int)
if not is_gt:
raw_data["tk_confidences"][t] = np.empty(0)
if is_gt:
key_map = {"ids": "gt_ids", "classes": "gt_classes", "dets": "gt_dets"}
else:
key_map = {"ids": "tk_ids", "classes": "tk_classes", "dets": "tk_dets"}
for k, v in key_map.items():
raw_data[v] = raw_data.pop(k)
raw_data["num_timesteps"] = num_timesteps
raw_data["neg_cat_ids"] = self.seq2cls[seq_id]["neg_cat_ids"]
raw_data["not_exh_labeled_cls"] = self.seq2cls[seq_id][
"not_exh_labeled_cat_ids"
]
raw_data["seq"] = seq
return raw_data
def get_preprocessed_seq_data_thr(self, raw_data, cls, assignment=None):
"""Preprocess data for a single sequence for a single class.
Inputs:
raw_data: dict containing the data for the sequence already
read in by get_raw_seq_data().
cls: class to be evaluated.
Outputs:
gt_ids:
list (for each timestep) of ids of GT tracks
tk_ids:
list (for each timestep) of ids of predicted tracks (all for TP
matching (Det + AssocA))
tk_overlap_ids:
list (for each timestep) of ids of predicted tracks that overlap
with GTs
tk_neg_ids:
list (for each timestep) of ids of predicted tracks that with
the class id on the negative list for the current sequence.
tk_exh_ids:
list (for each timestep) of ids of predicted tracks that do not
overlap with existing GTs but have the class id on the
exhaustive annotated class list for the current sequence.
tk_dets:
list (for each timestep) of lists of detections that
corresponding to the tk_ids
tk_classes:
list (for each timestep) of lists of classes that corresponding
to the tk_ids
tk_confidences:
list (for each timestep) of lists of classes that corresponding
to the tk_ids
sim_scores:
similarity score between gt_ids and tk_ids.
"""
if cls != "all":
cls_id = self.cls_name2clsid[cls]
data_keys = [
"gt_ids",
"tk_ids",
"gt_id_map",
"tk_id_map",
"gt_dets",
"gt_classes",
"gt_class_name",
"tk_overlap_classes",
"tk_overlap_ids",
"tk_neg_ids",
"tk_exh_ids",
"tk_class_eval_tk_ids",
"tk_dets",
"tk_classes",
"tk_confidences",
"sim_scores",
]
data = {key: [None] * raw_data["num_timesteps"] for key in data_keys}
unique_gt_ids = []
unique_tk_ids = []
num_gt_dets = 0
num_tk_cls_dets = 0
num_tk_overlap_dets = 0
overlap_ious_thr = 0.5
loc_and_asso_tk_ids = []
for t in range(raw_data["num_timesteps"]):
# only extract relevant dets for this class for preproc and eval
if cls == "all":
gt_class_mask = np.ones_like(raw_data["gt_classes"][t]).astype(bool)
else:
gt_class_mask = np.atleast_1d(
raw_data["gt_classes"][t] == cls_id
).astype(bool)
# select GT that is not in the evaluating classes
if assignment is not None and assignment:
all_gt_ids = list(assignment[t].keys())
gt_ids_in = raw_data["gt_ids"][t][gt_class_mask]
gt_ids_out = set(all_gt_ids) - set(gt_ids_in)
tk_ids_out = set([assignment[t][key] for key in list(gt_ids_out)])
# compute overlapped tracks and add their ids to overlap_tk_ids
sim_scores = raw_data["similarity_scores"]
overlap_ids_masks = (sim_scores[t][gt_class_mask] >= overlap_ious_thr).any(
axis=0
)
overlap_tk_ids_t = raw_data["tk_ids"][t][overlap_ids_masks]
if assignment is not None and assignment:
data["tk_overlap_ids"][t] = list(set(overlap_tk_ids_t) - tk_ids_out)
else:
data["tk_overlap_ids"][t] = list(set(overlap_tk_ids_t))
loc_and_asso_tk_ids += data["tk_overlap_ids"][t]
data["tk_exh_ids"][t] = []
data["tk_neg_ids"][t] = []
if cls == "all":
continue
# remove tk_ids that has been assigned to GT belongs to other classes.
loc_and_asso_tk_ids = list(set(loc_and_asso_tk_ids))
# remove all unwanted unmatched tracker detections
for t in range(raw_data["num_timesteps"]):
# add gt to the data
if cls == "all":
gt_class_mask = np.ones_like(raw_data["gt_classes"][t]).astype(bool)
else:
gt_class_mask = np.atleast_1d(
raw_data["gt_classes"][t] == cls_id
).astype(bool)
data["gt_classes"][t] = cls_id
data["gt_class_name"][t] = cls
gt_ids = raw_data["gt_ids"][t][gt_class_mask]
if self.use_mask:
gt_dets = [raw_data['gt_dets'][t][ind] for ind in range(len(gt_class_mask)) if gt_class_mask[ind]]
else:
gt_dets = raw_data["gt_dets"][t][gt_class_mask]
data["gt_ids"][t] = gt_ids
data["gt_dets"][t] = gt_dets
# filter pred and only keep those that highly overlap with GTs
tk_mask = np.isin(
raw_data["tk_ids"][t], np.array(loc_and_asso_tk_ids), assume_unique=True
)
tk_overlap_mask = np.isin(
raw_data["tk_ids"][t],
np.array(data["tk_overlap_ids"][t]),
assume_unique=True,
)
tk_ids = raw_data["tk_ids"][t][tk_mask]
if self.use_mask:
tk_dets = [raw_data['tk_dets'][t][ind] for ind in range(len(tk_mask)) if
tk_mask[ind]]
else:
tk_dets = raw_data["tk_dets"][t][tk_mask]
tracker_classes = raw_data["tk_classes"][t][tk_mask]
# add overlap classes for computing the FP for Cls term
tracker_overlap_classes = raw_data["tk_classes"][t][tk_overlap_mask]
tracker_confidences = raw_data["tk_confidences"][t][tk_mask]
sim_scores_masked = sim_scores[t][gt_class_mask, :][:, tk_mask]
# add filtered prediction to the data
data["tk_classes"][t] = tracker_classes
data["tk_overlap_classes"][t] = tracker_overlap_classes
data["tk_ids"][t] = tk_ids
data["tk_dets"][t] = tk_dets
data["tk_confidences"][t] = tracker_confidences
data["sim_scores"][t] = sim_scores_masked
data["tk_class_eval_tk_ids"][t] = set(
list(data["tk_overlap_ids"][t])
+ list(data["tk_neg_ids"][t])
+ list(data["tk_exh_ids"][t])
)
# count total number of detections
unique_gt_ids += list(np.unique(data["gt_ids"][t]))
# the unique track ids are for association.
unique_tk_ids += list(np.unique(data["tk_ids"][t]))
num_tk_overlap_dets += len(data["tk_overlap_ids"][t])
num_tk_cls_dets += len(data["tk_class_eval_tk_ids"][t])
num_gt_dets += len(data["gt_ids"][t])
# re-label IDs such that there are no empty IDs
if len(unique_gt_ids) > 0:
unique_gt_ids = np.unique(unique_gt_ids)
gt_id_map = np.nan * np.ones((np.max(unique_gt_ids) + 1))
gt_id_map[unique_gt_ids] = np.arange(len(unique_gt_ids))
data["gt_id_map"] = {}
for gt_id in unique_gt_ids:
new_gt_id = gt_id_map[gt_id].astype(int)
data["gt_id_map"][new_gt_id] = gt_id
for t in range(raw_data["num_timesteps"]):
if len(data["gt_ids"][t]) > 0:
data["gt_ids"][t] = gt_id_map[data["gt_ids"][t]].astype(int)
if len(unique_tk_ids) > 0:
unique_tk_ids = np.unique(unique_tk_ids)
tk_id_map = np.nan * np.ones((np.max(unique_tk_ids) + 1))
tk_id_map[unique_tk_ids] = np.arange(len(unique_tk_ids))
data["tk_id_map"] = {}
for track_id in unique_tk_ids:
new_track_id = tk_id_map[track_id].astype(int)
data["tk_id_map"][new_track_id] = track_id
for t in range(raw_data["num_timesteps"]):
if len(data["tk_ids"][t]) > 0:
data["tk_ids"][t] = tk_id_map[data["tk_ids"][t]].astype(int)
if len(data["tk_overlap_ids"][t]) > 0:
data["tk_overlap_ids"][t] = tk_id_map[
data["tk_overlap_ids"][t]
].astype(int)
# record overview statistics.
data["num_tk_cls_dets"] = num_tk_cls_dets
data["num_tk_overlap_dets"] = num_tk_overlap_dets
data["num_gt_dets"] = num_gt_dets
data["num_tk_ids"] = len(unique_tk_ids)
data["num_gt_ids"] = len(unique_gt_ids)
data["num_timesteps"] = raw_data["num_timesteps"]
data["seq"] = raw_data["seq"]
self._check_unique_ids(data)
return data
@_timing.time
def get_preprocessed_seq_data(
self, raw_data, cls, assignment=None, thresholds=[50, 75]
):
"""Preprocess data for a single sequence for a single class."""
data = {}
if thresholds is None:
thresholds = [50]
elif isinstance(thresholds, int):
thresholds = [thresholds]
for thr in thresholds:
assignment_thr = None
if assignment is not None:
assignment_thr = assignment[thr]
data[thr] = self.get_preprocessed_seq_data_thr(
raw_data, cls, assignment_thr
)
return data
def _calculate_similarities(self, gt_dets_t, tk_dets_t):
"""Compute similarity scores."""
if self.use_mask:
similarity_scores = self._calculate_mask_ious(gt_dets_t, tk_dets_t, is_encoded=True, do_ioa=False)
else:
similarity_scores = self._calculate_box_ious(gt_dets_t, tk_dets_t)
return similarity_scores
def _merge_categories(self, annotations):
"""Merges categories with a merged tag.
Adapted from https://github.com/TAO-Dataset.
"""
merge_map = {}
for category in self.gt_data["categories"]:
if "merged" in category:
for to_merge in category["merged"]:
merge_map[to_merge["id"]] = category["id"]
for ann in annotations:
ann["category_id"] = merge_map.get(ann["category_id"], ann["category_id"])
def _compute_vid_mappings(self, annotations):
"""Computes mappings from videos to corresponding tracks and images."""
vids_to_tracks = {}
vids_to_imgs = {}
vid_ids = [vid["id"] for vid in self.gt_data["videos"]]
# compute an mapping from image IDs to images
images = {}
for image in self.gt_data["images"]:
images[image["id"]] = image
for ann in annotations:
ann["area"] = ann["bbox"][2] * ann["bbox"][3]
vid = ann["video_id"]
if ann["video_id"] not in vids_to_tracks.keys():
vids_to_tracks[ann["video_id"]] = list()
if ann["video_id"] not in vids_to_imgs.keys():
vids_to_imgs[ann["video_id"]] = list()
# fill in vids_to_tracks
tid = ann["track_id"]
exist_tids = [track["id"] for track in vids_to_tracks[vid]]
try:
index1 = exist_tids.index(tid)
except ValueError:
index1 = -1
if tid not in exist_tids:
curr_track = {
"id": tid,
"category_id": ann["category_id"],
"video_id": vid,
"annotations": [ann],
}
vids_to_tracks[vid].append(curr_track)
else:
vids_to_tracks[vid][index1]["annotations"].append(ann)
# fill in vids_to_imgs
img_id = ann["image_id"]
exist_img_ids = [img["id"] for img in vids_to_imgs[vid]]
try:
index2 = exist_img_ids.index(img_id)
except ValueError:
index2 = -1
if index2 == -1:
curr_img = {"id": img_id, "annotations": [ann]}
vids_to_imgs[vid].append(curr_img)
else:
vids_to_imgs[vid][index2]["annotations"].append(ann)
# sort annotations by frame index and compute track area
for vid, tracks in vids_to_tracks.items():
for track in tracks:
track["annotations"] = sorted(
track["annotations"],
key=lambda x: images[x["image_id"]]["frame_index"],
)
# compute average area
track["area"] = sum(x["area"] for x in track["annotations"]) / len(
track["annotations"]
)
# ensure all videos are present
for vid_id in vid_ids:
if vid_id not in vids_to_tracks.keys():
vids_to_tracks[vid_id] = []
if vid_id not in vids_to_imgs.keys():
vids_to_imgs[vid_id] = []
return vids_to_tracks, vids_to_imgs
def _compute_image_to_timestep_mappings(self):
"""Computes a mapping from images to timestep in sequence."""
images = {}
for image in self.gt_data["images"]:
images[image["id"]] = image
seq_to_imgs_to_timestep = {vid["id"]: dict() for vid in self.gt_data["videos"]}
for vid in seq_to_imgs_to_timestep:
curr_imgs = [img["id"] for img in self.video2gt_image[vid]]
curr_imgs = sorted(curr_imgs, key=lambda x: images[x]["frame_index"])
seq_to_imgs_to_timestep[vid] = {
curr_imgs[i]: i for i in range(len(curr_imgs))
}
return seq_to_imgs_to_timestep
def _limit_dets_per_image(self, annotations):
"""Limits the number of detections for each image.
Adapted from https://github.com/TAO-Dataset/.
"""
max_dets = self.config["MAX_DETECTIONS"]
img_ann = defaultdict(list)
for ann in annotations:
img_ann[ann["image_id"]].append(ann)
for img_id, _anns in img_ann.items():
if len(_anns) <= max_dets:
continue
_anns = sorted(_anns, key=lambda x: x["score"], reverse=True)
img_ann[img_id] = _anns[:max_dets]
return [ann for anns in img_ann.values() for ann in anns]
def _fill_video_ids_inplace(self, annotations):
"""Fills in missing video IDs inplace.
Adapted from https://github.com/TAO-Dataset/.
"""
missing_video_id = [x for x in annotations if "video_id" not in x]
if missing_video_id:
image_id_to_video_id = {
x["id"]: x["video_id"] for x in self.gt_data["images"]
}
for x in missing_video_id:
x["video_id"] = image_id_to_video_id[x["image_id"]]
@staticmethod
def _make_tk_ids_unique(annotations):
"""Makes track IDs unqiue over the whole annotation set.
Adapted from https://github.com/TAO-Dataset/.
"""
track_id_videos = {}
track_ids_to_update = set()
max_track_id = 0
for ann in annotations:
t = ann["track_id"]
if t not in track_id_videos:
track_id_videos[t] = ann["video_id"]
if ann["video_id"] != track_id_videos[t]:
# track id is assigned to multiple videos
track_ids_to_update.add(t)
max_track_id = max(max_track_id, t)
if track_ids_to_update:
print("true")
next_id = itertools.count(max_track_id + 1)
new_tk_ids = defaultdict(lambda: next(next_id))
for ann in annotations:
t = ann["track_id"]
v = ann["video_id"]
if t in track_ids_to_update:
ann["track_id"] = new_tk_ids[t, v]
return len(track_ids_to_update)